hypothesis.add.homologous — hypothesis.add.homologous • TRONCO

Add all the hypotheses related to homologou events

hypothesis.add.homologous(
  x,
  pattern.cause = "*",
  pattern.effect = "*",
  genes = as.genes(x),
  silent = FALSE
)

Arguments

x: A TRONCO compliant dataset.
pattern.cause: Possibile causes for the pattern.
pattern.effect: Possibile effects for the pattern.
genes: List of genes to be considered as possible homologous. For these genes, all the types of mutations will be considered functionally equivalent.
silent: A parameter to disable/enable verbose messages.

A TRONCO compliant object with the added hypotheses