Extract the models from a reconstructed object.
as.models(x, models = names(x$model))The models in a reconstructed object.
data(test_model)
as.models(test_model)
#> $capri_bic
#> $capri_bic$probabilities
#> $capri_bic$probabilities$probabilities.observed
#> $capri_bic$probabilities$probabilities.observed$marginal.probs
#> marginal probability
#> gene 4 0.07416667
#> gene 5 0.02946970
#> gene 7 0.16984848
#> gene 29 0.35257576
#> gene 30 0.07954545
#> gene 31 0.02962121
#> gene 32 0.07318182
#> gene 33 0.14984848
#> gene 34 0.07045455
#> gene 36 0.03295455
#> gene 40 0.02727273
#> gene 44 0.02916667
#> gene 47 0.02984848
#> gene 49 0.02750000
#> gene 50 0.03166667
#> gene 51 0.02954545
#> gene 52 0.03068182
#> gene 53 0.03166667
#> gene 54 0.03060606
#> gene 55 0.10598485
#> gene 56 0.05242424
#> gene 66 0.02886364
#> gene 69 0.02916667
#> gene 77 0.05113636
#> gene 88 0.12439394
#> gene 89 0.02810606
#> gene 91 0.10007576
#> gene 111 0.07856061
#> XOR_EZH2 0.19787879
#> OR_CSF3R 0.15500000
#>
#> $capri_bic$probabilities$probabilities.observed$joint.probs
#> gene 4 gene 5 gene 7 gene 29 gene 30 gene 31
#> gene 4 0.07348485 0.00000000 0.02272727 0.00000000 0.00000000 0.000
#> gene 5 0.00000000 0.02484848 0.02484848 0.00000000 0.00000000 0.000
#> gene 7 0.02272727 0.02484848 0.16984848 0.02439394 0.00000000 0.025
#> gene 29 0.00000000 0.00000000 0.02439394 0.35257576 0.05090909 0.000
#> gene 30 0.00000000 0.00000000 0.00000000 0.05090909 0.07909091 0.000
#> gene 31 0.00000000 0.00000000 0.02500000 0.00000000 0.00000000 0.025
#> gene 32 0.00000000 0.02484848 0.04863636 0.00000000 0.00000000 0.000
#> gene 33 0.04939394 0.00000000 0.04696970 0.00000000 0.02818182 0.000
#> gene 34 0.02272727 0.00000000 0.02272727 0.04727273 0.00000000 0.000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 44 0.00000000 0.00000000 0.00000000 0.02378788 0.02378788 0.000
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 49 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 50 0.00000000 0.00000000 0.00000000 0.02742424 0.00000000 0.000
#> gene 51 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182 0.000
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 55 0.00000000 0.00000000 0.00000000 0.05590909 0.00000000 0.000
#> gene 56 0.05075758 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 66 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 69 0.02409091 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 77 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 88 0.00000000 0.00000000 0.02424242 0.05075758 0.02378788 0.000
#> gene 89 0.00000000 0.00000000 0.00000000 0.02318182 0.00000000 0.000
#> gene 91 0.00000000 0.00000000 0.00000000 0.10000000 0.00000000 0.000
#> gene 111 0.00000000 0.00000000 0.00000000 0.05287879 0.00000000 0.000
#> XOR_EZH2 0.04939394 0.02484848 0.07181818 0.02318182 0.02818182 0.000
#> OR_CSF3R 0.00000000 0.00000000 0.00000000 0.07984848 0.00000000 0.000
#> gene 32 gene 33 gene 34 gene 36 gene 40 gene 44
#> gene 4 0.00000000 0.04939394 0.02272727 0.00000000 0.00000000 0.00000000
#> gene 5 0.02484848 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 7 0.04863636 0.04696970 0.02272727 0.00000000 0.00000000 0.00000000
#> gene 29 0.00000000 0.00000000 0.04727273 0.00000000 0.00000000 0.02378788
#> gene 30 0.00000000 0.02818182 0.00000000 0.00000000 0.00000000 0.02378788
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.07257576 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 33 0.00000000 0.14984848 0.02272727 0.00000000 0.00000000 0.00000000
#> gene 34 0.00000000 0.02272727 0.07000000 0.00000000 0.00000000 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.02878788 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.02212121 0.00000000
#> gene 44 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02378788
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 49 0.00000000 0.02257576 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 50 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.02545455 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 53 0.00000000 0.02818182 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 56 0.00000000 0.02666667 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 66 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 69 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 77 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 88 0.00000000 0.02424242 0.00000000 0.00000000 0.00000000 0.02378788
#> gene 89 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 91 0.00000000 0.00000000 0.04727273 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> XOR_EZH2 0.02484848 0.14984848 0.02272727 0.00000000 0.00000000 0.00000000
#> OR_CSF3R 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 gene 49 gene 50 gene 51 gene 52 gene 53
#> gene 4 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 5 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 7 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 29 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 30 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 33 0.00000000 0.02257576 0.00000000 0.02545455 0.00000000 0.02818182
#> gene 34 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 44 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 0.02590909 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 49 0.00000000 0.02257576 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 50 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.00000000 0.00000000 0.02545455 0.00000000 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.02666667 0.00000000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 56 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 66 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 69 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 77 0.02590909 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 88 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 89 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 91 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> XOR_EZH2 0.00000000 0.02257576 0.00000000 0.02545455 0.00000000 0.02818182
#> OR_CSF3R 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 54 gene 55 gene 56 gene 66 gene 69 gene 77
#> gene 4 0.00000000 0.00000000 0.05075758 0.00000000 0.02409091 0.00000000
#> gene 5 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 7 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 29 0.00000000 0.05590909 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 30 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.00000000 0.02393939 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 33 0.00000000 0.00000000 0.02666667 0.00000000 0.00000000 0.00000000
#> gene 34 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 44 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02590909
#> gene 49 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 50 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 54 0.02575758 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.00000000 0.10590909 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 56 0.00000000 0.00000000 0.05075758 0.00000000 0.02409091 0.00000000
#> gene 66 0.00000000 0.02393939 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 69 0.00000000 0.00000000 0.02409091 0.00000000 0.02409091 0.00000000
#> gene 77 0.00000000 0.02393939 0.00000000 0.02393939 0.00000000 0.04984848
#> gene 88 0.00000000 0.02696970 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 89 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 91 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.02893939 0.00000000 0.00000000 0.00000000 0.00000000
#> XOR_EZH2 0.00000000 0.00000000 0.02666667 0.00000000 0.00000000 0.00000000
#> OR_CSF3R 0.00000000 0.10590909 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 88 gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 0.00000000 0.00000000 0.00000000 0.00000000 0.04939394 0.00000000
#> gene 5 0.00000000 0.00000000 0.00000000 0.00000000 0.02484848 0.00000000
#> gene 7 0.02424242 0.00000000 0.00000000 0.00000000 0.07181818 0.00000000
#> gene 29 0.05075758 0.02318182 0.10000000 0.05287879 0.02318182 0.07984848
#> gene 30 0.02378788 0.00000000 0.00000000 0.00000000 0.02818182 0.00000000
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.00000000 0.00000000 0.00000000 0.00000000 0.02484848 0.02393939
#> gene 33 0.02424242 0.00000000 0.00000000 0.00000000 0.14984848 0.00000000
#> gene 34 0.00000000 0.00000000 0.04727273 0.00000000 0.02272727 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 44 0.02378788 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 49 0.00000000 0.00000000 0.00000000 0.00000000 0.02257576 0.00000000
#> gene 50 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.00000000 0.00000000 0.00000000 0.02545455 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182 0.00000000
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.02696970 0.00000000 0.00000000 0.02893939 0.00000000 0.10590909
#> gene 56 0.00000000 0.00000000 0.00000000 0.00000000 0.02666667 0.00000000
#> gene 66 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02393939
#> gene 69 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 77 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02393939
#> gene 88 0.12439394 0.00000000 0.00000000 0.00000000 0.02424242 0.02696970
#> gene 89 0.00000000 0.02318182 0.00000000 0.00000000 0.02318182 0.00000000
#> gene 91 0.00000000 0.00000000 0.10000000 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.00000000 0.00000000 0.07803030 0.00000000 0.07803030
#> XOR_EZH2 0.02424242 0.02318182 0.00000000 0.00000000 0.19787879 0.00000000
#> OR_CSF3R 0.02696970 0.00000000 0.00000000 0.07803030 0.00000000 0.15500000
#>
#> $capri_bic$probabilities$probabilities.observed$conditional.probs
#> conditional probability
#> gene 4 0.3296259
#> gene 5 0.3395445
#> gene 7 1
#> gene 29 1
#> gene 30 1
#> gene 31 1
#> gene 32 0.2863515
#> gene 33 1
#> gene 34 0.4723694
#> gene 36 1
#> gene 40 1
#> gene 44 0.2990476
#> gene 47 0.5066667
#> gene 49 0.1506572
#> gene 50 0.2740348
#> gene 51 0.1698686
#> gene 52 1
#> gene 53 0.3542857
#> gene 54 1
#> gene 55 1
#> gene 56 0.6843718
#> gene 66 0.4681481
#> gene 69 0.4595376
#> gene 77 1
#> gene 88 1
#> gene 89 1
#> gene 91 0.283627
#> gene 111 1
#> XOR_EZH2 1
#> OR_CSF3R 1
#>
#>
#> $capri_bic$probabilities$probabilities.fit
#> $capri_bic$probabilities$probabilities.fit$estimated.marginal.probs
#> [1] NA
#>
#> $capri_bic$probabilities$probabilities.fit$estimated.joint.probs
#> [1] NA
#>
#> $capri_bic$probabilities$probabilities.fit$estimated.conditional.probs
#> [1] NA
#>
#>
#>
#> $capri_bic$parents.pos
#> parents
#> gene 4 8
#> gene 5 7
#> gene 7 -1
#> gene 29 -1
#> gene 30 -1
#> gene 31 -1
#> gene 32 3
#> gene 33 -1
#> gene 34 27
#> gene 36 -1
#> gene 40 -1
#> gene 44 5
#> gene 47 24
#> gene 49 8
#> gene 50 27
#> gene 51 8
#> gene 52 -1
#> gene 53 5
#> gene 54 -1
#> gene 55 -1
#> gene 56 1
#> gene 66 24
#> gene 69 21
#> gene 77 -1
#> gene 88 -1
#> gene 89 -1
#> gene 91 4
#> gene 111 -1
#> XOR_EZH2 -1
#> OR_CSF3R -1
#>
#> $capri_bic$error.rates
#> $capri_bic$error.rates$error.fp
#> [1] NA
#>
#> $capri_bic$error.rates$error.fn
#> [1] NA
#>
#>
#> $capri_bic$adj.matrix
#> $capri_bic$adj.matrix$adj.matrix.pf
#> gene 4 gene 5 gene 7 gene 29 gene 30 gene 31 gene 32 gene 33 gene 34
#> gene 4 0 0 0 0 0 0 0 0 1
#> gene 5 0 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 1 1 0 1
#> gene 29 0 0 0 0 1 0 0 0 1
#> gene 30 0 0 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0 0
#> gene 32 0 1 0 0 0 0 0 0 0
#> gene 33 1 0 0 0 1 0 0 0 1
#> gene 34 0 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 1 0 0
#> gene 56 0 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 0 0 0 0 0
#> gene 88 0 0 0 0 1 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0 1
#> gene 111 0 0 0 0 0 0 0 0 0
#> XOR_EZH2 1 0 0 0 1 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 1 0 0
#> gene 36 gene 40 gene 44 gene 47 gene 49 gene 50 gene 51 gene 52
#> gene 4 0 0 0 0 0 0 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 1 0 0 1 0 0
#> gene 30 0 0 1 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 0 0 0 0
#> gene 33 0 0 0 0 1 0 1 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 0 0
#> gene 56 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 1 0 0 0 0
#> gene 88 0 0 1 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 1 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 1 0 1 0
#> OR_CSF3R 0 0 0 0 0 0 0 0
#> gene 53 gene 54 gene 55 gene 56 gene 66 gene 69 gene 77 gene 88
#> gene 4 0 0 0 1 0 1 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 1 0 0 0 0 1
#> gene 30 1 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 1 0 1 0
#> gene 33 1 0 0 1 0 0 0 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 1 0 1 0
#> gene 56 0 0 0 0 0 1 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 1 0 0 0
#> gene 88 0 0 1 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 1 0 0 1 0 0 0 0
#> OR_CSF3R 0 0 0 0 1 0 1 0
#> gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 0 0 0 0 0
#> gene 5 0 0 0 0 0
#> gene 7 0 0 0 0 0
#> gene 29 1 1 1 0 1
#> gene 30 0 0 0 0 0
#> gene 31 0 0 0 0 0
#> gene 32 0 0 0 0 0
#> gene 33 0 0 0 0 0
#> gene 34 0 0 0 0 0
#> gene 36 0 0 0 0 0
#> gene 40 0 0 0 0 0
#> gene 44 0 0 0 0 0
#> gene 47 0 0 0 0 0
#> gene 49 0 0 0 0 0
#> gene 50 0 0 0 0 0
#> gene 51 0 0 0 0 0
#> gene 52 0 0 0 0 0
#> gene 53 0 0 0 0 0
#> gene 54 0 0 0 0 0
#> gene 55 0 0 1 0 0
#> gene 56 0 0 0 0 0
#> gene 66 0 0 0 0 0
#> gene 69 0 0 0 0 0
#> gene 77 0 0 0 0 0
#> gene 88 0 0 0 0 0
#> gene 89 0 0 0 0 0
#> gene 91 0 0 0 0 0
#> gene 111 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0
#>
#> $capri_bic$adj.matrix$adj.matrix.fit
#> gene 4 gene 5 gene 7 gene 29 gene 30 gene 31 gene 32 gene 33 gene 34
#> gene 4 0 0 0 0 0 0 0 0 0
#> gene 5 0 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 1 0 0
#> gene 29 0 0 0 0 0 0 0 0 0
#> gene 30 0 0 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0 0
#> gene 32 0 1 0 0 0 0 0 0 0
#> gene 33 1 0 0 0 0 0 0 0 0
#> gene 34 0 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 0 0 0
#> gene 56 0 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 0 0 0 0 0
#> gene 88 0 0 0 0 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0 1
#> gene 111 0 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 0 0 0
#> gene 36 gene 40 gene 44 gene 47 gene 49 gene 50 gene 51 gene 52
#> gene 4 0 0 0 0 0 0 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 0 0 0 0 0 0
#> gene 30 0 0 1 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 0 0 0 0
#> gene 33 0 0 0 0 1 0 1 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 0 0
#> gene 56 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 1 0 0 0 0
#> gene 88 0 0 0 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 1 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 0 0
#> gene 53 gene 54 gene 55 gene 56 gene 66 gene 69 gene 77 gene 88
#> gene 4 0 0 0 1 0 0 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 0 0 0 0 0 0
#> gene 30 1 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 0 0 0 0
#> gene 33 0 0 0 0 0 0 0 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 0 0
#> gene 56 0 0 0 0 0 1 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 1 0 0 0
#> gene 88 0 0 0 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 0 0
#> gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 0 0 0 0 0
#> gene 5 0 0 0 0 0
#> gene 7 0 0 0 0 0
#> gene 29 0 1 0 0 0
#> gene 30 0 0 0 0 0
#> gene 31 0 0 0 0 0
#> gene 32 0 0 0 0 0
#> gene 33 0 0 0 0 0
#> gene 34 0 0 0 0 0
#> gene 36 0 0 0 0 0
#> gene 40 0 0 0 0 0
#> gene 44 0 0 0 0 0
#> gene 47 0 0 0 0 0
#> gene 49 0 0 0 0 0
#> gene 50 0 0 0 0 0
#> gene 51 0 0 0 0 0
#> gene 52 0 0 0 0 0
#> gene 53 0 0 0 0 0
#> gene 54 0 0 0 0 0
#> gene 55 0 0 0 0 0
#> gene 56 0 0 0 0 0
#> gene 66 0 0 0 0 0
#> gene 69 0 0 0 0 0
#> gene 77 0 0 0 0 0
#> gene 88 0 0 0 0 0
#> gene 89 0 0 0 0 0
#> gene 91 0 0 0 0 0
#> gene 111 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0
#>
#>
#> $capri_bic$score
#> [1] -316.9889
#>
#> $capri_bic$logLik
#> [1] -235.8336
#>
#>
#> $capri_aic
#> $capri_aic$probabilities
#> $capri_aic$probabilities$probabilities.observed
#> $capri_aic$probabilities$probabilities.observed$marginal.probs
#> marginal probability
#> gene 4 0.07416667
#> gene 5 0.02946970
#> gene 7 0.16984848
#> gene 29 0.35257576
#> gene 30 0.07954545
#> gene 31 0.02962121
#> gene 32 0.07318182
#> gene 33 0.14984848
#> gene 34 0.07045455
#> gene 36 0.03295455
#> gene 40 0.02727273
#> gene 44 0.02916667
#> gene 47 0.02984848
#> gene 49 0.02750000
#> gene 50 0.03166667
#> gene 51 0.02954545
#> gene 52 0.03068182
#> gene 53 0.03166667
#> gene 54 0.03060606
#> gene 55 0.10598485
#> gene 56 0.05242424
#> gene 66 0.02886364
#> gene 69 0.02916667
#> gene 77 0.05113636
#> gene 88 0.12439394
#> gene 89 0.02810606
#> gene 91 0.10007576
#> gene 111 0.07856061
#> XOR_EZH2 0.19787879
#> OR_CSF3R 0.15500000
#>
#> $capri_aic$probabilities$probabilities.observed$joint.probs
#> gene 4 gene 5 gene 7 gene 29 gene 30 gene 31
#> gene 4 0.07348485 0.00000000 0.02272727 0.00000000 0.00000000 0.000
#> gene 5 0.00000000 0.02484848 0.02484848 0.00000000 0.00000000 0.000
#> gene 7 0.02272727 0.02484848 0.16984848 0.02439394 0.00000000 0.025
#> gene 29 0.00000000 0.00000000 0.02439394 0.35257576 0.05090909 0.000
#> gene 30 0.00000000 0.00000000 0.00000000 0.05090909 0.07909091 0.000
#> gene 31 0.00000000 0.00000000 0.02500000 0.00000000 0.00000000 0.025
#> gene 32 0.00000000 0.02484848 0.04863636 0.00000000 0.00000000 0.000
#> gene 33 0.04939394 0.00000000 0.04696970 0.00000000 0.02818182 0.000
#> gene 34 0.02272727 0.00000000 0.02272727 0.04727273 0.00000000 0.000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 44 0.00000000 0.00000000 0.00000000 0.02378788 0.02378788 0.000
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 49 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 50 0.00000000 0.00000000 0.00000000 0.02742424 0.00000000 0.000
#> gene 51 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182 0.000
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 55 0.00000000 0.00000000 0.00000000 0.05590909 0.00000000 0.000
#> gene 56 0.05075758 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 66 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 69 0.02409091 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 77 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.000
#> gene 88 0.00000000 0.00000000 0.02424242 0.05075758 0.02378788 0.000
#> gene 89 0.00000000 0.00000000 0.00000000 0.02318182 0.00000000 0.000
#> gene 91 0.00000000 0.00000000 0.00000000 0.10000000 0.00000000 0.000
#> gene 111 0.00000000 0.00000000 0.00000000 0.05287879 0.00000000 0.000
#> XOR_EZH2 0.04939394 0.02484848 0.07181818 0.02318182 0.02818182 0.000
#> OR_CSF3R 0.00000000 0.00000000 0.00000000 0.07984848 0.00000000 0.000
#> gene 32 gene 33 gene 34 gene 36 gene 40 gene 44
#> gene 4 0.00000000 0.04939394 0.02272727 0.00000000 0.00000000 0.00000000
#> gene 5 0.02484848 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 7 0.04863636 0.04696970 0.02272727 0.00000000 0.00000000 0.00000000
#> gene 29 0.00000000 0.00000000 0.04727273 0.00000000 0.00000000 0.02378788
#> gene 30 0.00000000 0.02818182 0.00000000 0.00000000 0.00000000 0.02378788
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.07257576 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 33 0.00000000 0.14984848 0.02272727 0.00000000 0.00000000 0.00000000
#> gene 34 0.00000000 0.02272727 0.07000000 0.00000000 0.00000000 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.02878788 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.02212121 0.00000000
#> gene 44 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02378788
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 49 0.00000000 0.02257576 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 50 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.02545455 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 53 0.00000000 0.02818182 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 56 0.00000000 0.02666667 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 66 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 69 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 77 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 88 0.00000000 0.02424242 0.00000000 0.00000000 0.00000000 0.02378788
#> gene 89 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 91 0.00000000 0.00000000 0.04727273 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> XOR_EZH2 0.02484848 0.14984848 0.02272727 0.00000000 0.00000000 0.00000000
#> OR_CSF3R 0.02393939 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 gene 49 gene 50 gene 51 gene 52 gene 53
#> gene 4 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 5 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 7 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 29 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 30 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 33 0.00000000 0.02257576 0.00000000 0.02545455 0.00000000 0.02818182
#> gene 34 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 44 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 0.02590909 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 49 0.00000000 0.02257576 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 50 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.00000000 0.00000000 0.02545455 0.00000000 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.02666667 0.00000000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 56 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 66 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 69 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 77 0.02590909 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 88 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 89 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 91 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> XOR_EZH2 0.00000000 0.02257576 0.00000000 0.02545455 0.00000000 0.02818182
#> OR_CSF3R 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 54 gene 55 gene 56 gene 66 gene 69 gene 77
#> gene 4 0.00000000 0.00000000 0.05075758 0.00000000 0.02409091 0.00000000
#> gene 5 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 7 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 29 0.00000000 0.05590909 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 30 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.00000000 0.02393939 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 33 0.00000000 0.00000000 0.02666667 0.00000000 0.00000000 0.00000000
#> gene 34 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 44 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02590909
#> gene 49 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 50 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 54 0.02575758 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.00000000 0.10590909 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 56 0.00000000 0.00000000 0.05075758 0.00000000 0.02409091 0.00000000
#> gene 66 0.00000000 0.02393939 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 69 0.00000000 0.00000000 0.02409091 0.00000000 0.02409091 0.00000000
#> gene 77 0.00000000 0.02393939 0.00000000 0.02393939 0.00000000 0.04984848
#> gene 88 0.00000000 0.02696970 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 89 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 91 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.02893939 0.00000000 0.00000000 0.00000000 0.00000000
#> XOR_EZH2 0.00000000 0.00000000 0.02666667 0.00000000 0.00000000 0.00000000
#> OR_CSF3R 0.00000000 0.10590909 0.00000000 0.02393939 0.00000000 0.02393939
#> gene 88 gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 0.00000000 0.00000000 0.00000000 0.00000000 0.04939394 0.00000000
#> gene 5 0.00000000 0.00000000 0.00000000 0.00000000 0.02484848 0.00000000
#> gene 7 0.02424242 0.00000000 0.00000000 0.00000000 0.07181818 0.00000000
#> gene 29 0.05075758 0.02318182 0.10000000 0.05287879 0.02318182 0.07984848
#> gene 30 0.02378788 0.00000000 0.00000000 0.00000000 0.02818182 0.00000000
#> gene 31 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 32 0.00000000 0.00000000 0.00000000 0.00000000 0.02484848 0.02393939
#> gene 33 0.02424242 0.00000000 0.00000000 0.00000000 0.14984848 0.00000000
#> gene 34 0.00000000 0.00000000 0.04727273 0.00000000 0.02272727 0.00000000
#> gene 36 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 40 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 44 0.02378788 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 47 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 49 0.00000000 0.00000000 0.00000000 0.00000000 0.02257576 0.00000000
#> gene 50 0.00000000 0.00000000 0.02742424 0.00000000 0.00000000 0.00000000
#> gene 51 0.00000000 0.00000000 0.00000000 0.00000000 0.02545455 0.00000000
#> gene 52 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 53 0.00000000 0.00000000 0.00000000 0.00000000 0.02818182 0.00000000
#> gene 54 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 55 0.02696970 0.00000000 0.00000000 0.02893939 0.00000000 0.10590909
#> gene 56 0.00000000 0.00000000 0.00000000 0.00000000 0.02666667 0.00000000
#> gene 66 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02393939
#> gene 69 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
#> gene 77 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.02393939
#> gene 88 0.12439394 0.00000000 0.00000000 0.00000000 0.02424242 0.02696970
#> gene 89 0.00000000 0.02318182 0.00000000 0.00000000 0.02318182 0.00000000
#> gene 91 0.00000000 0.00000000 0.10000000 0.00000000 0.00000000 0.00000000
#> gene 111 0.00000000 0.00000000 0.00000000 0.07803030 0.00000000 0.07803030
#> XOR_EZH2 0.02424242 0.02318182 0.00000000 0.00000000 0.19787879 0.00000000
#> OR_CSF3R 0.02696970 0.00000000 0.00000000 0.07803030 0.00000000 0.15500000
#>
#> $capri_aic$probabilities$probabilities.observed$conditional.probs
#> conditional probability
#> gene 4 0.3296259
#> gene 5 0.3395445
#> gene 7 1
#> gene 29 1
#> gene 30 1
#> gene 31 0.14719
#> gene 32 numeric,2
#> gene 33 1
#> gene 34 numeric,2
#> gene 36 1
#> gene 40 1
#> gene 44 0.2990476
#> gene 47 0.5066667
#> gene 49 0.1506572
#> gene 50 0.2740348
#> gene 51 0.1698686
#> gene 52 1
#> gene 53 0.3542857
#> gene 54 1
#> gene 55 1
#> gene 56 0.6843718
#> gene 66 0.4681481
#> gene 69 0.4595376
#> gene 77 numeric,2
#> gene 88 1
#> gene 89 0.06574989
#> gene 91 0.283627
#> gene 111 1
#> XOR_EZH2 1
#> OR_CSF3R 1
#>
#>
#> $capri_aic$probabilities$probabilities.fit
#> $capri_aic$probabilities$probabilities.fit$estimated.marginal.probs
#> [1] NA
#>
#> $capri_aic$probabilities$probabilities.fit$estimated.joint.probs
#> [1] NA
#>
#> $capri_aic$probabilities$probabilities.fit$estimated.conditional.probs
#> [1] NA
#>
#>
#>
#> $capri_aic$parents.pos
#> parents
#> gene 4 8
#> gene 5 7
#> gene 7 -1
#> gene 29 -1
#> gene 30 -1
#> gene 31 3
#> gene 32 integer,2
#> gene 33 -1
#> gene 34 integer,2
#> gene 36 -1
#> gene 40 -1
#> gene 44 5
#> gene 47 24
#> gene 49 8
#> gene 50 27
#> gene 51 8
#> gene 52 -1
#> gene 53 5
#> gene 54 -1
#> gene 55 -1
#> gene 56 1
#> gene 66 24
#> gene 69 21
#> gene 77 integer,2
#> gene 88 -1
#> gene 89 4
#> gene 91 4
#> gene 111 -1
#> XOR_EZH2 -1
#> OR_CSF3R -1
#>
#> $capri_aic$error.rates
#> $capri_aic$error.rates$error.fp
#> [1] NA
#>
#> $capri_aic$error.rates$error.fn
#> [1] NA
#>
#>
#> $capri_aic$adj.matrix
#> $capri_aic$adj.matrix$adj.matrix.pf
#> gene 4 gene 5 gene 7 gene 29 gene 30 gene 31 gene 32 gene 33 gene 34
#> gene 4 0 0 0 0 0 0 0 0 1
#> gene 5 0 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 1 1 0 1
#> gene 29 0 0 0 0 1 0 0 0 1
#> gene 30 0 0 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0 0
#> gene 32 0 1 0 0 0 0 0 0 0
#> gene 33 1 0 0 0 1 0 0 0 1
#> gene 34 0 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 1 0 0
#> gene 56 0 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 0 0 0 0 0
#> gene 88 0 0 0 0 1 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0 1
#> gene 111 0 0 0 0 0 0 0 0 0
#> XOR_EZH2 1 0 0 0 1 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 1 0 0
#> gene 36 gene 40 gene 44 gene 47 gene 49 gene 50 gene 51 gene 52
#> gene 4 0 0 0 0 0 0 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 1 0 0 1 0 0
#> gene 30 0 0 1 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 0 0 0 0
#> gene 33 0 0 0 0 1 0 1 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 0 0
#> gene 56 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 1 0 0 0 0
#> gene 88 0 0 1 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 1 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 1 0 1 0
#> OR_CSF3R 0 0 0 0 0 0 0 0
#> gene 53 gene 54 gene 55 gene 56 gene 66 gene 69 gene 77 gene 88
#> gene 4 0 0 0 1 0 1 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 1 0 0 0 0 1
#> gene 30 1 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 1 0 1 0
#> gene 33 1 0 0 1 0 0 0 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 1 0 1 0
#> gene 56 0 0 0 0 0 1 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 1 0 0 0
#> gene 88 0 0 1 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 1 0 0 1 0 0 0 0
#> OR_CSF3R 0 0 0 0 1 0 1 0
#> gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 0 0 0 0 0
#> gene 5 0 0 0 0 0
#> gene 7 0 0 0 0 0
#> gene 29 1 1 1 0 1
#> gene 30 0 0 0 0 0
#> gene 31 0 0 0 0 0
#> gene 32 0 0 0 0 0
#> gene 33 0 0 0 0 0
#> gene 34 0 0 0 0 0
#> gene 36 0 0 0 0 0
#> gene 40 0 0 0 0 0
#> gene 44 0 0 0 0 0
#> gene 47 0 0 0 0 0
#> gene 49 0 0 0 0 0
#> gene 50 0 0 0 0 0
#> gene 51 0 0 0 0 0
#> gene 52 0 0 0 0 0
#> gene 53 0 0 0 0 0
#> gene 54 0 0 0 0 0
#> gene 55 0 0 1 0 0
#> gene 56 0 0 0 0 0
#> gene 66 0 0 0 0 0
#> gene 69 0 0 0 0 0
#> gene 77 0 0 0 0 0
#> gene 88 0 0 0 0 0
#> gene 89 0 0 0 0 0
#> gene 91 0 0 0 0 0
#> gene 111 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0
#>
#> $capri_aic$adj.matrix$adj.matrix.fit
#> gene 4 gene 5 gene 7 gene 29 gene 30 gene 31 gene 32 gene 33 gene 34
#> gene 4 0 0 0 0 0 0 0 0 1
#> gene 5 0 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 1 1 0 0
#> gene 29 0 0 0 0 0 0 0 0 0
#> gene 30 0 0 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0 0
#> gene 32 0 1 0 0 0 0 0 0 0
#> gene 33 1 0 0 0 0 0 0 0 0
#> gene 34 0 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 1 0 0
#> gene 56 0 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 0 0 0 0 0
#> gene 88 0 0 0 0 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0 1
#> gene 111 0 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 0 0 0
#> gene 36 gene 40 gene 44 gene 47 gene 49 gene 50 gene 51 gene 52
#> gene 4 0 0 0 0 0 0 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 0 0 0 0 0 0
#> gene 30 0 0 1 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 0 0 0 0
#> gene 33 0 0 0 0 1 0 1 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 0 0
#> gene 56 0 0 0 0 0 0 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 1 0 0 0 0
#> gene 88 0 0 0 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 1 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 0 0
#> gene 53 gene 54 gene 55 gene 56 gene 66 gene 69 gene 77 gene 88
#> gene 4 0 0 0 1 0 0 0 0
#> gene 5 0 0 0 0 0 0 0 0
#> gene 7 0 0 0 0 0 0 0 0
#> gene 29 0 0 0 0 0 0 0 0
#> gene 30 1 0 0 0 0 0 0 0
#> gene 31 0 0 0 0 0 0 0 0
#> gene 32 0 0 0 0 0 0 1 0
#> gene 33 0 0 0 0 0 0 0 0
#> gene 34 0 0 0 0 0 0 0 0
#> gene 36 0 0 0 0 0 0 0 0
#> gene 40 0 0 0 0 0 0 0 0
#> gene 44 0 0 0 0 0 0 0 0
#> gene 47 0 0 0 0 0 0 0 0
#> gene 49 0 0 0 0 0 0 0 0
#> gene 50 0 0 0 0 0 0 0 0
#> gene 51 0 0 0 0 0 0 0 0
#> gene 52 0 0 0 0 0 0 0 0
#> gene 53 0 0 0 0 0 0 0 0
#> gene 54 0 0 0 0 0 0 0 0
#> gene 55 0 0 0 0 0 0 0 0
#> gene 56 0 0 0 0 0 1 0 0
#> gene 66 0 0 0 0 0 0 0 0
#> gene 69 0 0 0 0 0 0 0 0
#> gene 77 0 0 0 0 1 0 0 0
#> gene 88 0 0 0 0 0 0 0 0
#> gene 89 0 0 0 0 0 0 0 0
#> gene 91 0 0 0 0 0 0 0 0
#> gene 111 0 0 0 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0 0 1 0
#> gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 0 0 0 0 0
#> gene 5 0 0 0 0 0
#> gene 7 0 0 0 0 0
#> gene 29 1 1 0 0 0
#> gene 30 0 0 0 0 0
#> gene 31 0 0 0 0 0
#> gene 32 0 0 0 0 0
#> gene 33 0 0 0 0 0
#> gene 34 0 0 0 0 0
#> gene 36 0 0 0 0 0
#> gene 40 0 0 0 0 0
#> gene 44 0 0 0 0 0
#> gene 47 0 0 0 0 0
#> gene 49 0 0 0 0 0
#> gene 50 0 0 0 0 0
#> gene 51 0 0 0 0 0
#> gene 52 0 0 0 0 0
#> gene 53 0 0 0 0 0
#> gene 54 0 0 0 0 0
#> gene 55 0 0 0 0 0
#> gene 56 0 0 0 0 0
#> gene 66 0 0 0 0 0
#> gene 69 0 0 0 0 0
#> gene 77 0 0 0 0 0
#> gene 88 0 0 0 0 0
#> gene 89 0 0 0 0 0
#> gene 91 0 0 0 0 0
#> gene 111 0 0 0 0 0
#> XOR_EZH2 0 0 0 0 0
#> OR_CSF3R 0 0 0 0 0
#>
#>
#> $capri_aic$score
#> [1] -277.5718
#>
#> $capri_aic$logLik
#> [1] -224.5718
#>
#>