Return the hypotheses in the dataset which constitute CAPRI's hypotheses.
as.hypotheses(x, cause = NA, effect = NA)The hypotheses in the dataset which constitute CAPRI's hypotheses.
data(test_dataset)
as.hypotheses(test_dataset)
#> cause type cause event effect type
#> [1,] "Pattern" "XOR_EZH2" "ins_del"
#> [2,] "Pattern" "XOR_EZH2" "ins_del"
#> [3,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [4,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [5,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [6,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [7,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [8,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [9,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [10,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [11,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [12,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [13,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [14,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [15,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [16,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [17,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [18,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [19,] "Pattern" "XOR_EZH2" "missense_point_mutations"
#> [20,] "Pattern" "XOR_EZH2" "nonsense_ins_del"
#> [21,] "Pattern" "XOR_EZH2" "nonsense_ins_del"
#> [22,] "Pattern" "XOR_EZH2" "nonsense_ins_del"
#> [23,] "Pattern" "XOR_EZH2" "nonsense_point_mutations"
#> [24,] "Pattern" "XOR_EZH2" "nonsense_point_mutations"
#> [25,] "Pattern" "XOR_EZH2" "nonsense_point_mutations"
#> [26,] "ins_del" "TET2" "Pattern"
#> [27,] "ins_del" "ASXL1" "Pattern"
#> [28,] "missense_point_mutations" "SETBP1" "Pattern"
#> [29,] "missense_point_mutations" "NRAS_Ex2_3" "Pattern"
#> [30,] "missense_point_mutations" "KRAS_Ex2_3" "Pattern"
#> [31,] "missense_point_mutations" "TET2" "Pattern"
#> [32,] "missense_point_mutations" "CBL_Ex_8_9" "Pattern"
#> [33,] "missense_point_mutations" "IDH2_R140" "Pattern"
#> [34,] "missense_point_mutations" "SF3B1_Ex_12_15" "Pattern"
#> [35,] "missense_point_mutations" "JARID_2_Ex1_18" "Pattern"
#> [36,] "missense_point_mutations" "EED_Ex2_12" "Pattern"
#> [37,] "missense_point_mutations" "CEBPA" "Pattern"
#> [38,] "missense_point_mutations" "EPHB3" "Pattern"
#> [39,] "missense_point_mutations" "ETNK1" "Pattern"
#> [40,] "missense_point_mutations" "GATA2" "Pattern"
#> [41,] "missense_point_mutations" "IRAK4" "Pattern"
#> [42,] "missense_point_mutations" "MTA2" "Pattern"
#> [43,] "missense_point_mutations" "CSF3R" "Pattern"
#> [44,] "missense_point_mutations" "KIT" "Pattern"
#> [45,] "nonsense_ins_del" "WT1" "Pattern"
#> [46,] "nonsense_ins_del" "RUNX_1" "Pattern"
#> [47,] "nonsense_ins_del" "CEBPA" "Pattern"
#> [48,] "nonsense_point_mutations" "TET2" "Pattern"
#> [49,] "nonsense_point_mutations" "ASXL1" "Pattern"
#> [50,] "nonsense_point_mutations" "CSF3R" "Pattern"
#> [51,] "Pattern" "OR_CSF3R" "ins_del"
#> [52,] "Pattern" "OR_CSF3R" "ins_del"
#> [53,] "Pattern" "OR_CSF3R" "ins_del"
#> [54,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [55,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [56,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [57,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [58,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [59,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [60,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [61,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [62,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [63,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [64,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [65,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [66,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [67,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [68,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [69,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [70,] "Pattern" "OR_CSF3R" "missense_point_mutations"
#> [71,] "Pattern" "OR_CSF3R" "nonsense_ins_del"
#> [72,] "Pattern" "OR_CSF3R" "nonsense_ins_del"
#> [73,] "Pattern" "OR_CSF3R" "nonsense_ins_del"
#> [74,] "Pattern" "OR_CSF3R" "nonsense_point_mutations"
#> [75,] "Pattern" "OR_CSF3R" "nonsense_point_mutations"
#> [76,] "Pattern" "OR_CSF3R" "nonsense_point_mutations"
#> [77,] "ins_del" "TET2" "Pattern"
#> [78,] "ins_del" "EZH2" "Pattern"
#> [79,] "ins_del" "ASXL1" "Pattern"
#> [80,] "missense_point_mutations" "SETBP1" "Pattern"
#> [81,] "missense_point_mutations" "NRAS_Ex2_3" "Pattern"
#> [82,] "missense_point_mutations" "KRAS_Ex2_3" "Pattern"
#> [83,] "missense_point_mutations" "TET2" "Pattern"
#> [84,] "missense_point_mutations" "EZH2" "Pattern"
#> [85,] "missense_point_mutations" "CBL_Ex_8_9" "Pattern"
#> [86,] "missense_point_mutations" "IDH2_R140" "Pattern"
#> [87,] "missense_point_mutations" "SF3B1_Ex_12_15" "Pattern"
#> [88,] "missense_point_mutations" "JARID_2_Ex1_18" "Pattern"
#> [89,] "missense_point_mutations" "EED_Ex2_12" "Pattern"
#> [90,] "missense_point_mutations" "CEBPA" "Pattern"
#> [91,] "missense_point_mutations" "EPHB3" "Pattern"
#> [92,] "missense_point_mutations" "ETNK1" "Pattern"
#> [93,] "missense_point_mutations" "GATA2" "Pattern"
#> [94,] "missense_point_mutations" "IRAK4" "Pattern"
#> [95,] "missense_point_mutations" "MTA2" "Pattern"
#> [96,] "missense_point_mutations" "KIT" "Pattern"
#> [97,] "nonsense_ins_del" "WT1" "Pattern"
#> [98,] "nonsense_ins_del" "RUNX_1" "Pattern"
#> [99,] "nonsense_ins_del" "CEBPA" "Pattern"
#> [100,] "nonsense_point_mutations" "TET2" "Pattern"
#> [101,] "nonsense_point_mutations" "EZH2" "Pattern"
#> [102,] "nonsense_point_mutations" "ASXL1" "Pattern"
#> effect event
#> [1,] "TET2"
#> [2,] "ASXL1"
#> [3,] "SETBP1"
#> [4,] "NRAS_Ex2_3"
#> [5,] "KRAS_Ex2_3"
#> [6,] "TET2"
#> [7,] "CBL_Ex_8_9"
#> [8,] "IDH2_R140"
#> [9,] "SF3B1_Ex_12_15"
#> [10,] "JARID_2_Ex1_18"
#> [11,] "EED_Ex2_12"
#> [12,] "CEBPA"
#> [13,] "EPHB3"
#> [14,] "ETNK1"
#> [15,] "GATA2"
#> [16,] "IRAK4"
#> [17,] "MTA2"
#> [18,] "CSF3R"
#> [19,] "KIT"
#> [20,] "WT1"
#> [21,] "RUNX_1"
#> [22,] "CEBPA"
#> [23,] "TET2"
#> [24,] "ASXL1"
#> [25,] "CSF3R"
#> [26,] "XOR_EZH2"
#> [27,] "XOR_EZH2"
#> [28,] "XOR_EZH2"
#> [29,] "XOR_EZH2"
#> [30,] "XOR_EZH2"
#> [31,] "XOR_EZH2"
#> [32,] "XOR_EZH2"
#> [33,] "XOR_EZH2"
#> [34,] "XOR_EZH2"
#> [35,] "XOR_EZH2"
#> [36,] "XOR_EZH2"
#> [37,] "XOR_EZH2"
#> [38,] "XOR_EZH2"
#> [39,] "XOR_EZH2"
#> [40,] "XOR_EZH2"
#> [41,] "XOR_EZH2"
#> [42,] "XOR_EZH2"
#> [43,] "XOR_EZH2"
#> [44,] "XOR_EZH2"
#> [45,] "XOR_EZH2"
#> [46,] "XOR_EZH2"
#> [47,] "XOR_EZH2"
#> [48,] "XOR_EZH2"
#> [49,] "XOR_EZH2"
#> [50,] "XOR_EZH2"
#> [51,] "TET2"
#> [52,] "EZH2"
#> [53,] "ASXL1"
#> [54,] "SETBP1"
#> [55,] "NRAS_Ex2_3"
#> [56,] "KRAS_Ex2_3"
#> [57,] "TET2"
#> [58,] "EZH2"
#> [59,] "CBL_Ex_8_9"
#> [60,] "IDH2_R140"
#> [61,] "SF3B1_Ex_12_15"
#> [62,] "JARID_2_Ex1_18"
#> [63,] "EED_Ex2_12"
#> [64,] "CEBPA"
#> [65,] "EPHB3"
#> [66,] "ETNK1"
#> [67,] "GATA2"
#> [68,] "IRAK4"
#> [69,] "MTA2"
#> [70,] "KIT"
#> [71,] "WT1"
#> [72,] "RUNX_1"
#> [73,] "CEBPA"
#> [74,] "TET2"
#> [75,] "EZH2"
#> [76,] "ASXL1"
#> [77,] "OR_CSF3R"
#> [78,] "OR_CSF3R"
#> [79,] "OR_CSF3R"
#> [80,] "OR_CSF3R"
#> [81,] "OR_CSF3R"
#> [82,] "OR_CSF3R"
#> [83,] "OR_CSF3R"
#> [84,] "OR_CSF3R"
#> [85,] "OR_CSF3R"
#> [86,] "OR_CSF3R"
#> [87,] "OR_CSF3R"
#> [88,] "OR_CSF3R"
#> [89,] "OR_CSF3R"
#> [90,] "OR_CSF3R"
#> [91,] "OR_CSF3R"
#> [92,] "OR_CSF3R"
#> [93,] "OR_CSF3R"
#> [94,] "OR_CSF3R"
#> [95,] "OR_CSF3R"
#> [96,] "OR_CSF3R"
#> [97,] "OR_CSF3R"
#> [98,] "OR_CSF3R"
#> [99,] "OR_CSF3R"
#> [100,] "OR_CSF3R"
#> [101,] "OR_CSF3R"
#> [102,] "OR_CSF3R"