Return confidence information for a TRONCO model. Available information are: temporal priority (tp),
probability raising (pr), hypergeometric test (hg), parametric (pb), non parametric (npb) or
statistical (sb) bootstrap, entropy loss (eloss), prediction error (prederr).
Confidence is available only once a model has been reconstructed with any of the algorithms implemented
in TRONCO. If more than one model has been reconstructed - for instance via multiple regularizations -
confidence information is appropriately nested. The requested confidence is specified via
vector parameter conf.
as.confidence(x, conf, models = names(x$model))A list of matrices with the event-to-event confidence.
data(test_model)
as.confidence(test_model, conf='tp')
#> $tp
#> gene 4 gene 5 gene 7 gene 29 gene 30
#> gene 4 1.000000e+00 1.455680e-26 1.000000e+00 1 9.251274e-01
#> gene 5 1.000000e+00 1.000000e+00 1.000000e+00 1 1.000000e+00
#> gene 7 5.329851e-38 3.926171e-55 1.000000e+00 1 1.724654e-36
#> gene 29 4.736819e-56 9.709084e-57 6.798626e-51 1 4.357290e-56
#> gene 30 7.503856e-02 2.295716e-31 1.000000e+00 1 1.000000e+00
#> gene 31 1.000000e+00 4.509268e-01 1.000000e+00 1 1.000000e+00
#> gene 32 5.489782e-01 1.282066e-25 1.000000e+00 1 9.344646e-01
#> gene 33 9.373014e-28 1.918776e-52 9.991563e-01 1 3.120373e-25
#> gene 34 7.643872e-01 1.464270e-25 1.000000e+00 1 9.860117e-01
#> gene 36 1.000000e+00 1.002462e-01 1.000000e+00 1 1.000000e+00
#> gene 40 1.000000e+00 7.909232e-01 1.000000e+00 1 1.000000e+00
#> gene 44 1.000000e+00 7.337264e-01 1.000000e+00 1 1.000000e+00
#> gene 47 1.000000e+00 3.174193e-01 1.000000e+00 1 1.000000e+00
#> gene 49 1.000000e+00 7.387701e-01 1.000000e+00 1 1.000000e+00
#> gene 50 1.000000e+00 1.779009e-01 1.000000e+00 1 1.000000e+00
#> gene 51 1.000000e+00 3.036831e-01 1.000000e+00 1 1.000000e+00
#> gene 52 1.000000e+00 1.593646e-01 1.000000e+00 1 1.000000e+00
#> gene 53 1.000000e+00 5.479794e-02 1.000000e+00 1 1.000000e+00
#> gene 54 1.000000e+00 4.507570e-01 1.000000e+00 1 1.000000e+00
#> gene 55 8.972807e-11 8.857734e-45 1.000000e+00 1 5.160503e-08
#> gene 56 9.999986e-01 8.703374e-13 1.000000e+00 1 1.000000e+00
#> gene 66 1.000000e+00 6.386084e-01 1.000000e+00 1 1.000000e+00
#> gene 69 1.000000e+00 6.115105e-01 1.000000e+00 1 1.000000e+00
#> gene 77 9.999998e-01 1.552462e-12 1.000000e+00 1 1.000000e+00
#> gene 88 1.126419e-18 2.950660e-49 1.000000e+00 1 9.388325e-16
#> gene 89 1.000000e+00 6.967985e-01 1.000000e+00 1 1.000000e+00
#> gene 91 8.337071e-07 1.622532e-41 1.000000e+00 1 2.148264e-04
#> gene 111 1.253088e-01 3.862890e-31 1.000000e+00 1 6.427562e-01
#> XOR_EZH2 1.657722e-44 1.000000e+00 3.787203e-05 1 1.100280e-43
#> OR_CSF3R 9.610599e-32 1.261960e-52 9.841773e-01 1 6.816777e-30
#> gene 31 gene 32 gene 33 gene 34 gene 36
#> gene 4 1.547314e-26 4.514859e-01 1.000000e+00 2.359743e-01 2.342545e-22
#> gene 5 5.495566e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.999670e-01
#> gene 7 4.356112e-55 2.278343e-38 8.470797e-04 4.899826e-40 2.294724e-54
#> gene 29 1.064251e-56 3.984755e-56 6.509270e-52 4.145089e-56 1.447628e-56
#> gene 30 1.985077e-31 6.568508e-02 1.000000e+00 1.403023e-02 2.436703e-27
#> gene 31 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 8.809486e-01
#> gene 32 1.764283e-25 1.000000e+00 1.000000e+00 2.823813e-01 1.551439e-21
#> gene 33 1.847050e-52 4.563330e-28 1.000000e+00 3.690851e-30 6.286873e-51
#> gene 34 2.002835e-25 7.180153e-01 1.000000e+00 1.000000e+00 3.799642e-21
#> gene 36 1.192927e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 40 8.227594e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.813282e-01
#> gene 44 7.662783e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.661370e-01
#> gene 47 3.798879e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.121589e-01
#> gene 49 7.806570e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.737212e-01
#> gene 50 2.095278e-01 1.000000e+00 1.000000e+00 1.000000e+00 6.505522e-01
#> gene 51 3.565901e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.052310e-01
#> gene 52 1.911901e-01 1.000000e+00 1.000000e+00 1.000000e+00 6.442144e-01
#> gene 53 7.289301e-02 1.000000e+00 1.000000e+00 1.000000e+00 4.286338e-01
#> gene 54 4.948992e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.682621e-01
#> gene 55 8.353704e-45 5.618501e-11 1.000000e+00 4.545591e-13 7.177829e-42
#> gene 56 1.321968e-12 9.999966e-01 1.000000e+00 9.999781e-01 2.419613e-09
#> gene 66 6.848490e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.484744e-01
#> gene 69 6.545899e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.397323e-01
#> gene 77 2.963835e-12 9.999994e-01 1.000000e+00 9.999967e-01 6.503131e-09
#> gene 88 2.781146e-49 7.497944e-19 9.999184e-01 3.539068e-21 4.251280e-47
#> gene 89 7.390193e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.635395e-01
#> gene 91 1.150112e-41 6.597718e-07 1.000000e+00 1.650994e-08 6.652005e-38
#> gene 111 2.698640e-31 1.144128e-01 1.000000e+00 2.935592e-02 5.982824e-27
#> XOR_EZH2 5.535303e-56 5.693025e-45 1.000000e+00 4.306813e-46 1.354017e-55
#> OR_CSF3R 1.483475e-52 4.947292e-32 1.396996e-01 6.632084e-34 1.866588e-51
#> gene 40 gene 44 gene 47 gene 49 gene 50
#> gene 4 2.165386e-29 5.008267e-27 2.263522e-26 3.192407e-29 5.277778e-24
#> gene 5 2.094293e-01 2.666752e-01 6.830185e-01 2.616288e-01 8.224158e-01
#> gene 7 9.042160e-56 4.931317e-55 4.003732e-55 1.159402e-55 1.210707e-54
#> gene 29 8.419176e-57 9.175701e-57 6.888185e-57 8.336787e-57 1.287253e-56
#> gene 30 2.788036e-34 1.056706e-31 5.157664e-31 5.227785e-34 5.474974e-29
#> gene 31 1.775588e-01 2.340961e-01 6.205786e-01 2.197051e-01 7.908218e-01
#> gene 32 2.086112e-28 3.758638e-26 3.812068e-25 4.301145e-28 4.958266e-23
#> gene 33 1.214608e-53 2.709216e-52 2.057515e-52 1.677847e-53 1.443304e-51
#> gene 34 1.738248e-28 4.834981e-26 3.011753e-25 3.060859e-28 8.616538e-23
#> gene 36 1.872742e-02 3.395435e-02 1.881696e-01 2.635303e-02 3.498953e-01
#> gene 40 1.000000e+00 5.643395e-01 9.014077e-01 5.666406e-01 9.577996e-01
#> gene 44 4.361437e-01 1.000000e+00 8.638005e-01 5.024467e-01 9.314922e-01
#> gene 47 9.880598e-02 1.364671e-01 1.000000e+00 1.324596e-01 7.019801e-01
#> gene 49 4.338431e-01 4.980426e-01 8.678041e-01 1.000000e+00 9.435145e-01
#> gene 50 4.231026e-02 6.866853e-02 2.984434e-01 5.662415e-02 1.000000e+00
#> gene 51 9.189371e-02 1.329884e-01 4.624964e-01 1.189435e-01 6.829473e-01
#> gene 52 3.484817e-02 5.951470e-02 2.686340e-01 4.657274e-02 4.859700e-01
#> gene 53 7.824031e-03 1.625413e-02 1.062676e-01 1.103062e-02 2.761876e-01
#> gene 54 1.806809e-01 2.360790e-01 6.260883e-01 2.254798e-01 7.775074e-01
#> gene 55 5.230203e-47 1.126160e-44 1.553198e-44 9.837351e-47 4.491146e-43
#> gene 56 3.754344e-15 1.360701e-13 2.654492e-12 6.689968e-15 1.688733e-10
#> gene 66 3.300539e-01 3.940738e-01 7.915445e-01 3.900800e-01 8.992429e-01
#> gene 69 3.072810e-01 3.754195e-01 7.592675e-01 3.602876e-01 8.827444e-01
#> gene 77 6.488969e-15 2.216224e-13 4.511947e-12 1.134950e-14 4.576681e-10
#> gene 88 5.425064e-51 4.217177e-49 4.953952e-49 9.833821e-51 5.314708e-48
#> gene 89 3.852445e-01 4.500171e-01 8.407157e-01 4.515920e-01 9.251892e-01
#> gene 91 3.474747e-44 1.925081e-41 2.180308e-41 5.755818e-44 1.661066e-39
#> gene 111 3.779886e-34 2.032201e-31 5.878879e-31 5.866015e-34 9.465023e-29
#> XOR_EZH2 2.021003e-56 5.439267e-56 4.632102e-56 2.432208e-56 9.923625e-56
#> OR_CSF3R 1.546387e-53 1.361436e-52 1.636824e-52 2.239969e-53 7.180214e-52
#> gene 51 gene 52 gene 53 gene 54 gene 55
#> gene 4 1.086371e-26 4.166290e-25 4.513530e-24 3.046136e-25 1.000000e+00
#> gene 5 6.967445e-01 8.409308e-01 9.453371e-01 5.497257e-01 1.000000e+00
#> gene 7 2.633366e-55 3.104739e-55 4.347804e-55 1.018560e-54 1.883964e-22
#> gene 29 9.352671e-57 1.181415e-56 1.069432e-56 1.136122e-56 6.828657e-56
#> gene 30 1.128523e-31 2.456006e-30 2.827924e-29 5.478567e-30 9.999999e-01
#> gene 31 6.438652e-01 8.091411e-01 9.272754e-01 5.055866e-01 1.000000e+00
#> gene 32 1.712602e-25 4.817431e-24 7.261810e-23 2.539887e-24 1.000000e+00
#> gene 33 8.126240e-53 1.574250e-52 3.167398e-52 1.025199e-51 1.663992e-11
#> gene 34 1.595057e-25 7.199230e-24 1.048880e-22 3.874618e-24 1.000000e+00
#> gene 36 1.951038e-01 3.562367e-01 5.718416e-01 1.319965e-01 1.000000e+00
#> gene 40 9.083082e-01 9.652457e-01 9.922022e-01 8.196405e-01 1.000000e+00
#> gene 44 8.672738e-01 9.406292e-01 9.837951e-01 7.642969e-01 1.000000e+00
#> gene 47 5.379924e-01 7.317696e-01 8.939573e-01 3.743749e-01 1.000000e+00
#> gene 49 8.813001e-01 9.535461e-01 9.890048e-01 7.748872e-01 1.000000e+00
#> gene 50 3.174865e-01 5.145136e-01 7.242182e-01 2.228543e-01 1.000000e+00
#> gene 51 1.000000e+00 7.069561e-01 8.729173e-01 3.628007e-01 1.000000e+00
#> gene 52 2.934635e-01 1.000000e+00 7.143980e-01 2.063617e-01 1.000000e+00
#> gene 53 1.273372e-01 2.860155e-01 1.000000e+00 8.201938e-02 1.000000e+00
#> gene 54 6.376563e-01 7.939845e-01 9.181644e-01 1.000000e+00 1.000000e+00
#> gene 55 2.928759e-45 1.450209e-44 7.671125e-44 1.599977e-43 1.000000e+00
#> gene 56 2.391171e-12 5.531515e-11 6.047829e-10 6.903869e-12 1.000000e+00
#> gene 66 8.078831e-01 9.129183e-01 9.744163e-01 6.818311e-01 1.000000e+00
#> gene 69 7.769980e-01 8.953302e-01 9.656875e-01 6.580630e-01 1.000000e+00
#> gene 77 5.924895e-12 1.791474e-10 2.121713e-09 1.367533e-11 1.000000e+00
#> gene 88 1.083763e-49 2.840822e-49 1.005260e-48 3.058781e-48 5.771054e-04
#> gene 89 8.516760e-01 9.368002e-01 9.836354e-01 7.347714e-01 1.000000e+00
#> gene 91 3.268978e-42 4.019945e-41 2.577904e-40 4.730861e-40 9.535215e-01
#> gene 111 1.201388e-31 3.564199e-30 3.490003e-29 1.059821e-29 1.000000e+00
#> XOR_EZH2 3.987969e-56 4.161263e-56 4.919078e-56 8.725395e-56 1.255183e-32
#> OR_CSF3R 9.498741e-53 1.490719e-52 2.977122e-52 4.358181e-52 1.000000e+00
#> gene 56 gene 66 gene 69 gene 77 gene 88
#> gene 4 1.421229e-06 1.520465e-27 3.262925e-27 1.878551e-07 1.000000e+00
#> gene 5 1.000000e+00 3.618500e-01 3.889576e-01 1.000000e+00 1.000000e+00
#> gene 7 1.406181e-48 3.871476e-55 3.814918e-55 1.020476e-48 1.118920e-12
#> gene 29 2.661362e-56 9.537272e-57 9.933801e-57 2.142799e-56 5.185189e-55
#> gene 30 4.503478e-10 2.860128e-32 4.642122e-32 4.326071e-11 1.000000e+00
#> gene 31 1.000000e+00 3.155851e-01 3.458599e-01 1.000000e+00 1.000000e+00
#> gene 32 3.446275e-06 1.806902e-26 3.892678e-26 5.985653e-07 1.000000e+00
#> gene 33 5.489839e-41 1.305529e-52 1.366813e-52 1.519336e-41 8.200761e-05
#> gene 34 2.201635e-05 1.703306e-26 4.385265e-26 3.348595e-06 1.000000e+00
#> gene 36 1.000000e+00 5.165404e-02 6.041283e-02 1.000000e+00 1.000000e+00
#> gene 40 1.000000e+00 6.703902e-01 6.931495e-01 1.000000e+00 1.000000e+00
#> gene 44 1.000000e+00 6.063972e-01 6.250446e-01 1.000000e+00 1.000000e+00
#> gene 47 1.000000e+00 2.088079e-01 2.411136e-01 1.000000e+00 1.000000e+00
#> gene 49 1.000000e+00 6.103907e-01 6.401707e-01 1.000000e+00 1.000000e+00
#> gene 50 1.000000e+00 1.009720e-01 1.174950e-01 1.000000e+00 1.000000e+00
#> gene 51 1.000000e+00 1.924512e-01 2.233663e-01 1.000000e+00 1.000000e+00
#> gene 52 1.000000e+00 8.727485e-02 1.048907e-01 1.000000e+00 1.000000e+00
#> gene 53 1.000000e+00 2.565635e-02 3.440507e-02 1.000000e+00 1.000000e+00
#> gene 54 1.000000e+00 3.186043e-01 3.423848e-01 1.000000e+00 1.000000e+00
#> gene 55 1.845435e-25 3.309532e-45 4.172481e-45 1.860213e-26 9.994253e-01
#> gene 56 1.000000e+00 1.188597e-13 2.540051e-13 3.500525e-01 1.000000e+00
#> gene 66 1.000000e+00 1.000000e+00 5.302130e-01 1.000000e+00 1.000000e+00
#> gene 69 1.000000e+00 4.702734e-01 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 77 6.503864e-01 2.157029e-13 5.717675e-13 1.000000e+00 1.000000e+00
#> gene 88 1.322705e-33 1.620871e-49 1.768708e-49 2.165329e-34 1.000000e+00
#> gene 89 1.000000e+00 5.618497e-01 5.890778e-01 1.000000e+00 1.000000e+00
#> gene 91 8.235703e-20 3.106532e-42 4.495357e-42 3.737460e-21 9.999972e-01
#> gene 111 1.849720e-09 3.686504e-32 6.118775e-32 1.343979e-10 1.000000e+00
#> XOR_EZH2 4.242942e-52 5.212484e-56 5.071474e-56 3.988096e-52 3.801521e-23
#> OR_CSF3R 1.301805e-43 1.058573e-52 1.118007e-52 7.398044e-44 2.625743e-07
#> gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 2.414639e-28 9.999992e-01 8.749333e-01 1.000000e+00 1.000000e+00
#> gene 5 3.036297e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 7 1.762009e-55 3.211585e-24 1.024328e-36 9.999623e-01 1.586896e-02
#> gene 29 8.806722e-57 1.426321e-55 3.972375e-56 1.924352e-44 5.477097e-53
#> gene 30 3.880165e-33 9.997861e-01 3.576821e-01 1.000000e+00 1.000000e+00
#> gene 31 2.613784e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 32 2.478433e-27 9.999993e-01 8.858138e-01 1.000000e+00 1.000000e+00
#> gene 33 3.963727e-53 4.546772e-14 7.218800e-26 1.000000e+00 8.605589e-01
#> gene 34 2.181867e-27 1.000000e+00 9.707225e-01 1.000000e+00 1.000000e+00
#> gene 36 3.655774e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 40 6.152250e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 44 5.504679e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 47 1.595828e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 49 5.488945e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 50 7.498308e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 51 1.486077e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 52 6.335123e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 53 1.641445e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 54 2.656291e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 55 4.507238e-46 4.659239e-02 9.416075e-09 1.000000e+00 1.000000e+00
#> gene 56 2.808114e-14 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 66 4.386334e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 69 4.113983e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 77 4.693334e-14 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 88 3.090685e-50 2.860947e-06 1.636512e-16 1.000000e+00 9.999997e-01
#> gene 89 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 91 4.120282e-43 1.000000e+00 5.490475e-05 1.000000e+00 1.000000e+00
#> gene 111 5.417013e-33 9.999454e-01 1.000000e+00 1.000000e+00 1.000000e+00
#> XOR_EZH2 1.000000e+00 1.828484e-33 8.074223e-44 1.000000e+00 1.000000e+00
#> OR_CSF3R 3.892881e-53 8.311018e-18 1.000000e+00 1.000000e+00 1.000000e+00
#>
as.confidence(test_model, conf=c('tp', 'hg'))
#> $hg
#> gene 4 gene 5 gene 7 gene 29 gene 30 gene 31 gene 32
#> gene 4 1.00000000 0.075 0.44777328 0.73684211 0.21356275 0.075 0.21356275
#> gene 5 0.07500000 1.000 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 7 0.44777328 0.175 1.00000000 0.96471704 0.44777328 0.000 0.07368421
#> gene 29 0.73684211 0.350 0.96471704 1.00000000 0.03684211 0.350 0.73684211
#> gene 30 0.21356275 0.075 0.44777328 0.03684211 1.00000000 0.075 0.21356275
#> gene 31 0.07500000 0.025 0.00000000 0.35000000 0.07500000 1.000 0.07500000
#> gene 32 0.21356275 0.075 0.07368421 0.73684211 0.21356275 0.075 1.00000000
#> gene 33 0.05364372 0.150 0.27862275 0.94001897 0.05364372 0.150 0.39433198
#> gene 34 0.21356275 0.075 0.44777328 0.27631579 0.21356275 0.075 0.21356275
#> gene 36 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 40 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 44 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 47 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 49 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 50 0.07500000 0.025 0.17500000 0.00000000 0.07500000 0.025 0.07500000
#> gene 51 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 52 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 53 0.07500000 0.025 0.17500000 0.35000000 0.00000000 0.025 0.07500000
#> gene 54 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 55 0.27732794 0.100 0.55224860 0.11450925 0.27732794 0.100 0.27732794
#> gene 56 0.00000000 0.050 0.32307692 0.58333333 0.14615385 0.050 0.14615385
#> gene 66 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 69 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 77 0.14615385 0.050 0.32307692 0.58333333 0.14615385 0.050 0.14615385
#> gene 88 0.33755061 0.125 0.63931138 0.22238028 0.33755061 0.125 0.33755061
#> gene 89 0.07500000 0.025 0.17500000 0.35000000 0.07500000 0.025 0.07500000
#> gene 91 0.27732794 0.100 0.55224860 0.00000000 0.27732794 0.100 0.27732794
#> gene 111 0.21356275 0.075 0.44777328 0.03684211 0.21356275 0.075 0.21356275
#> XOR_EZH2 0.09635628 1.000 0.12817509 0.97968557 0.09635628 0.200 0.49797571
#> OR_CSF3R 0.39433198 0.150 0.71144910 0.09909910 0.39433198 0.150 0.39433198
#> gene 33 gene 34 gene 36 gene 40 gene 44 gene 47 gene 49 gene 50
#> gene 4 0.05364372 0.21356275 0.075 0.075 0.075 0.075 0.075 0.075
#> gene 5 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 7 0.27862275 0.44777328 0.175 0.175 0.175 0.175 0.175 0.175
#> gene 29 0.94001897 0.27631579 0.350 0.350 0.350 0.350 0.350 0.000
#> gene 30 0.05364372 0.21356275 0.075 0.075 0.075 0.075 0.075 0.075
#> gene 31 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 32 0.39433198 0.21356275 0.075 0.075 0.075 0.075 0.075 0.075
#> gene 33 1.00000000 0.39433198 0.150 0.150 0.150 0.150 0.150 0.150
#> gene 34 0.39433198 1.00000000 0.075 0.075 0.075 0.075 0.075 0.075
#> gene 36 0.15000000 0.07500000 1.000 0.025 0.025 0.025 0.025 0.025
#> gene 40 0.15000000 0.07500000 0.025 1.000 0.025 0.025 0.025 0.025
#> gene 44 0.15000000 0.07500000 0.025 0.025 1.000 0.025 0.025 0.025
#> gene 47 0.15000000 0.07500000 0.025 0.025 0.025 1.000 0.025 0.025
#> gene 49 0.15000000 0.07500000 0.025 0.025 0.025 0.025 1.000 0.025
#> gene 50 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 1.000
#> gene 51 0.00000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 52 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 53 0.00000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 54 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 55 0.49254842 0.27732794 0.100 0.100 0.100 0.100 0.100 0.100
#> gene 56 0.01923077 0.14615385 0.050 0.050 0.050 0.050 0.050 0.050
#> gene 66 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 69 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 77 0.28076923 0.14615385 0.050 0.050 0.050 0.000 0.050 0.050
#> gene 88 0.57712368 0.33755061 0.125 0.125 0.125 0.125 0.125 0.125
#> gene 89 0.15000000 0.07500000 0.025 0.025 0.025 0.025 0.025 0.025
#> gene 91 0.49254842 0.02226721 0.100 0.100 0.100 0.100 0.100 0.000
#> gene 111 0.39433198 0.21356275 0.075 0.075 0.075 0.075 0.075 0.075
#> XOR_EZH2 1.00000000 0.49797571 0.200 0.200 0.200 0.200 0.200 0.200
#> OR_CSF3R 0.64961677 0.39433198 0.150 0.150 0.150 0.150 0.150 0.150
#> gene 51 gene 52 gene 53 gene 54 gene 55 gene 56 gene 66 gene 69
#> gene 4 0.075 0.075 0.075 0.075 0.27732794 0.00000000 0.075 0.075
#> gene 5 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 7 0.175 0.175 0.175 0.175 0.55224860 0.32307692 0.175 0.175
#> gene 29 0.350 0.350 0.350 0.350 0.11450925 0.58333333 0.350 0.350
#> gene 30 0.075 0.075 0.000 0.075 0.27732794 0.14615385 0.075 0.075
#> gene 31 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 32 0.075 0.075 0.075 0.075 0.27732794 0.14615385 0.075 0.075
#> gene 33 0.000 0.150 0.000 0.150 0.49254842 0.01923077 0.150 0.150
#> gene 34 0.075 0.075 0.075 0.075 0.27732794 0.14615385 0.075 0.075
#> gene 36 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 40 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 44 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 47 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 49 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 50 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 51 1.000 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 52 0.025 1.000 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 53 0.025 0.025 1.000 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 54 0.025 0.025 0.025 1.000 0.10000000 0.05000000 0.025 0.025
#> gene 55 0.100 0.100 0.100 0.100 1.00000000 0.19230769 0.100 0.100
#> gene 56 0.050 0.050 0.050 0.050 0.19230769 1.00000000 0.050 0.050
#> gene 66 0.025 0.025 0.025 0.025 0.10000000 0.05000000 1.000 0.025
#> gene 69 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 1.000
#> gene 77 0.050 0.050 0.050 0.050 0.19230769 0.09871795 0.050 0.050
#> gene 88 0.125 0.125 0.125 0.125 0.06899004 0.23717949 0.125 0.125
#> gene 89 0.025 0.025 0.025 0.025 0.10000000 0.05000000 0.025 0.025
#> gene 91 0.100 0.100 0.100 0.100 0.35545464 0.19230769 0.100 0.100
#> gene 111 0.075 0.075 0.075 0.075 0.02226721 0.14615385 0.075 0.075
#> XOR_EZH2 0.000 0.200 0.000 0.200 0.60652150 0.03589744 0.200 0.200
#> OR_CSF3R 0.150 0.150 0.150 0.150 1.00000000 0.28076923 0.150 0.150
#> gene 77 gene 88 gene 89 gene 91 gene 111 XOR_EZH2
#> gene 4 0.14615385 0.33755061 0.075 0.27732794 0.21356275 0.09635628
#> gene 5 0.05000000 0.12500000 0.025 0.10000000 0.07500000 1.00000000
#> gene 7 0.32307692 0.63931138 0.175 0.55224860 0.44777328 0.12817509
#> gene 29 0.58333333 0.22238028 0.350 0.00000000 0.03684211 0.97968557
#> gene 30 0.14615385 0.33755061 0.075 0.27732794 0.21356275 0.09635628
#> gene 31 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 32 0.14615385 0.33755061 0.075 0.27732794 0.21356275 0.49797571
#> gene 33 0.28076923 0.57712368 0.150 0.49254842 0.39433198 1.00000000
#> gene 34 0.14615385 0.33755061 0.075 0.02226721 0.21356275 0.49797571
#> gene 36 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 40 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 44 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 47 0.00000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 49 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 50 0.05000000 0.12500000 0.025 0.00000000 0.07500000 0.20000000
#> gene 51 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.00000000
#> gene 52 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 53 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.00000000
#> gene 54 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 55 0.19230769 0.06899004 0.100 0.35545464 0.02226721 0.60652150
#> gene 56 0.09871795 0.23717949 0.050 0.19230769 0.14615385 0.03589744
#> gene 66 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 69 0.05000000 0.12500000 0.025 0.10000000 0.07500000 0.20000000
#> gene 77 1.00000000 0.23717949 0.050 0.19230769 0.14615385 0.36410256
#> gene 88 0.23717949 1.00000000 0.125 0.42707080 0.33755061 0.69396117
#> gene 89 0.05000000 0.12500000 1.000 0.10000000 0.07500000 1.00000000
#> gene 91 0.19230769 0.42707080 0.100 1.00000000 0.27732794 0.60652150
#> gene 111 0.14615385 0.33755061 0.075 0.27732794 1.00000000 0.49797571
#> XOR_EZH2 0.36410256 0.69396117 1.000 0.60652150 0.49797571 1.00000000
#> OR_CSF3R 0.28076923 0.15424736 0.150 0.49254842 1.00000000 1.00000000
#> OR_CSF3R
#> gene 4 0.3943320
#> gene 5 0.1500000
#> gene 7 0.7114491
#> gene 29 0.0990991
#> gene 30 0.3943320
#> gene 31 0.1500000
#> gene 32 0.3943320
#> gene 33 0.6496168
#> gene 34 0.3943320
#> gene 36 0.1500000
#> gene 40 0.1500000
#> gene 44 0.1500000
#> gene 47 0.1500000
#> gene 49 0.1500000
#> gene 50 0.1500000
#> gene 51 0.1500000
#> gene 52 0.1500000
#> gene 53 0.1500000
#> gene 54 0.1500000
#> gene 55 1.0000000
#> gene 56 0.2807692
#> gene 66 0.1500000
#> gene 69 0.1500000
#> gene 77 0.2807692
#> gene 88 0.1542474
#> gene 89 0.1500000
#> gene 91 0.4925484
#> gene 111 1.0000000
#> XOR_EZH2 1.0000000
#> OR_CSF3R 1.0000000
#>
#> $tp
#> gene 4 gene 5 gene 7 gene 29 gene 30
#> gene 4 1.000000e+00 1.455680e-26 1.000000e+00 1 9.251274e-01
#> gene 5 1.000000e+00 1.000000e+00 1.000000e+00 1 1.000000e+00
#> gene 7 5.329851e-38 3.926171e-55 1.000000e+00 1 1.724654e-36
#> gene 29 4.736819e-56 9.709084e-57 6.798626e-51 1 4.357290e-56
#> gene 30 7.503856e-02 2.295716e-31 1.000000e+00 1 1.000000e+00
#> gene 31 1.000000e+00 4.509268e-01 1.000000e+00 1 1.000000e+00
#> gene 32 5.489782e-01 1.282066e-25 1.000000e+00 1 9.344646e-01
#> gene 33 9.373014e-28 1.918776e-52 9.991563e-01 1 3.120373e-25
#> gene 34 7.643872e-01 1.464270e-25 1.000000e+00 1 9.860117e-01
#> gene 36 1.000000e+00 1.002462e-01 1.000000e+00 1 1.000000e+00
#> gene 40 1.000000e+00 7.909232e-01 1.000000e+00 1 1.000000e+00
#> gene 44 1.000000e+00 7.337264e-01 1.000000e+00 1 1.000000e+00
#> gene 47 1.000000e+00 3.174193e-01 1.000000e+00 1 1.000000e+00
#> gene 49 1.000000e+00 7.387701e-01 1.000000e+00 1 1.000000e+00
#> gene 50 1.000000e+00 1.779009e-01 1.000000e+00 1 1.000000e+00
#> gene 51 1.000000e+00 3.036831e-01 1.000000e+00 1 1.000000e+00
#> gene 52 1.000000e+00 1.593646e-01 1.000000e+00 1 1.000000e+00
#> gene 53 1.000000e+00 5.479794e-02 1.000000e+00 1 1.000000e+00
#> gene 54 1.000000e+00 4.507570e-01 1.000000e+00 1 1.000000e+00
#> gene 55 8.972807e-11 8.857734e-45 1.000000e+00 1 5.160503e-08
#> gene 56 9.999986e-01 8.703374e-13 1.000000e+00 1 1.000000e+00
#> gene 66 1.000000e+00 6.386084e-01 1.000000e+00 1 1.000000e+00
#> gene 69 1.000000e+00 6.115105e-01 1.000000e+00 1 1.000000e+00
#> gene 77 9.999998e-01 1.552462e-12 1.000000e+00 1 1.000000e+00
#> gene 88 1.126419e-18 2.950660e-49 1.000000e+00 1 9.388325e-16
#> gene 89 1.000000e+00 6.967985e-01 1.000000e+00 1 1.000000e+00
#> gene 91 8.337071e-07 1.622532e-41 1.000000e+00 1 2.148264e-04
#> gene 111 1.253088e-01 3.862890e-31 1.000000e+00 1 6.427562e-01
#> XOR_EZH2 1.657722e-44 1.000000e+00 3.787203e-05 1 1.100280e-43
#> OR_CSF3R 9.610599e-32 1.261960e-52 9.841773e-01 1 6.816777e-30
#> gene 31 gene 32 gene 33 gene 34 gene 36
#> gene 4 1.547314e-26 4.514859e-01 1.000000e+00 2.359743e-01 2.342545e-22
#> gene 5 5.495566e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.999670e-01
#> gene 7 4.356112e-55 2.278343e-38 8.470797e-04 4.899826e-40 2.294724e-54
#> gene 29 1.064251e-56 3.984755e-56 6.509270e-52 4.145089e-56 1.447628e-56
#> gene 30 1.985077e-31 6.568508e-02 1.000000e+00 1.403023e-02 2.436703e-27
#> gene 31 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 8.809486e-01
#> gene 32 1.764283e-25 1.000000e+00 1.000000e+00 2.823813e-01 1.551439e-21
#> gene 33 1.847050e-52 4.563330e-28 1.000000e+00 3.690851e-30 6.286873e-51
#> gene 34 2.002835e-25 7.180153e-01 1.000000e+00 1.000000e+00 3.799642e-21
#> gene 36 1.192927e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 40 8.227594e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.813282e-01
#> gene 44 7.662783e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.661370e-01
#> gene 47 3.798879e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.121589e-01
#> gene 49 7.806570e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.737212e-01
#> gene 50 2.095278e-01 1.000000e+00 1.000000e+00 1.000000e+00 6.505522e-01
#> gene 51 3.565901e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.052310e-01
#> gene 52 1.911901e-01 1.000000e+00 1.000000e+00 1.000000e+00 6.442144e-01
#> gene 53 7.289301e-02 1.000000e+00 1.000000e+00 1.000000e+00 4.286338e-01
#> gene 54 4.948992e-01 1.000000e+00 1.000000e+00 1.000000e+00 8.682621e-01
#> gene 55 8.353704e-45 5.618501e-11 1.000000e+00 4.545591e-13 7.177829e-42
#> gene 56 1.321968e-12 9.999966e-01 1.000000e+00 9.999781e-01 2.419613e-09
#> gene 66 6.848490e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.484744e-01
#> gene 69 6.545899e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.397323e-01
#> gene 77 2.963835e-12 9.999994e-01 1.000000e+00 9.999967e-01 6.503131e-09
#> gene 88 2.781146e-49 7.497944e-19 9.999184e-01 3.539068e-21 4.251280e-47
#> gene 89 7.390193e-01 1.000000e+00 1.000000e+00 1.000000e+00 9.635395e-01
#> gene 91 1.150112e-41 6.597718e-07 1.000000e+00 1.650994e-08 6.652005e-38
#> gene 111 2.698640e-31 1.144128e-01 1.000000e+00 2.935592e-02 5.982824e-27
#> XOR_EZH2 5.535303e-56 5.693025e-45 1.000000e+00 4.306813e-46 1.354017e-55
#> OR_CSF3R 1.483475e-52 4.947292e-32 1.396996e-01 6.632084e-34 1.866588e-51
#> gene 40 gene 44 gene 47 gene 49 gene 50
#> gene 4 2.165386e-29 5.008267e-27 2.263522e-26 3.192407e-29 5.277778e-24
#> gene 5 2.094293e-01 2.666752e-01 6.830185e-01 2.616288e-01 8.224158e-01
#> gene 7 9.042160e-56 4.931317e-55 4.003732e-55 1.159402e-55 1.210707e-54
#> gene 29 8.419176e-57 9.175701e-57 6.888185e-57 8.336787e-57 1.287253e-56
#> gene 30 2.788036e-34 1.056706e-31 5.157664e-31 5.227785e-34 5.474974e-29
#> gene 31 1.775588e-01 2.340961e-01 6.205786e-01 2.197051e-01 7.908218e-01
#> gene 32 2.086112e-28 3.758638e-26 3.812068e-25 4.301145e-28 4.958266e-23
#> gene 33 1.214608e-53 2.709216e-52 2.057515e-52 1.677847e-53 1.443304e-51
#> gene 34 1.738248e-28 4.834981e-26 3.011753e-25 3.060859e-28 8.616538e-23
#> gene 36 1.872742e-02 3.395435e-02 1.881696e-01 2.635303e-02 3.498953e-01
#> gene 40 1.000000e+00 5.643395e-01 9.014077e-01 5.666406e-01 9.577996e-01
#> gene 44 4.361437e-01 1.000000e+00 8.638005e-01 5.024467e-01 9.314922e-01
#> gene 47 9.880598e-02 1.364671e-01 1.000000e+00 1.324596e-01 7.019801e-01
#> gene 49 4.338431e-01 4.980426e-01 8.678041e-01 1.000000e+00 9.435145e-01
#> gene 50 4.231026e-02 6.866853e-02 2.984434e-01 5.662415e-02 1.000000e+00
#> gene 51 9.189371e-02 1.329884e-01 4.624964e-01 1.189435e-01 6.829473e-01
#> gene 52 3.484817e-02 5.951470e-02 2.686340e-01 4.657274e-02 4.859700e-01
#> gene 53 7.824031e-03 1.625413e-02 1.062676e-01 1.103062e-02 2.761876e-01
#> gene 54 1.806809e-01 2.360790e-01 6.260883e-01 2.254798e-01 7.775074e-01
#> gene 55 5.230203e-47 1.126160e-44 1.553198e-44 9.837351e-47 4.491146e-43
#> gene 56 3.754344e-15 1.360701e-13 2.654492e-12 6.689968e-15 1.688733e-10
#> gene 66 3.300539e-01 3.940738e-01 7.915445e-01 3.900800e-01 8.992429e-01
#> gene 69 3.072810e-01 3.754195e-01 7.592675e-01 3.602876e-01 8.827444e-01
#> gene 77 6.488969e-15 2.216224e-13 4.511947e-12 1.134950e-14 4.576681e-10
#> gene 88 5.425064e-51 4.217177e-49 4.953952e-49 9.833821e-51 5.314708e-48
#> gene 89 3.852445e-01 4.500171e-01 8.407157e-01 4.515920e-01 9.251892e-01
#> gene 91 3.474747e-44 1.925081e-41 2.180308e-41 5.755818e-44 1.661066e-39
#> gene 111 3.779886e-34 2.032201e-31 5.878879e-31 5.866015e-34 9.465023e-29
#> XOR_EZH2 2.021003e-56 5.439267e-56 4.632102e-56 2.432208e-56 9.923625e-56
#> OR_CSF3R 1.546387e-53 1.361436e-52 1.636824e-52 2.239969e-53 7.180214e-52
#> gene 51 gene 52 gene 53 gene 54 gene 55
#> gene 4 1.086371e-26 4.166290e-25 4.513530e-24 3.046136e-25 1.000000e+00
#> gene 5 6.967445e-01 8.409308e-01 9.453371e-01 5.497257e-01 1.000000e+00
#> gene 7 2.633366e-55 3.104739e-55 4.347804e-55 1.018560e-54 1.883964e-22
#> gene 29 9.352671e-57 1.181415e-56 1.069432e-56 1.136122e-56 6.828657e-56
#> gene 30 1.128523e-31 2.456006e-30 2.827924e-29 5.478567e-30 9.999999e-01
#> gene 31 6.438652e-01 8.091411e-01 9.272754e-01 5.055866e-01 1.000000e+00
#> gene 32 1.712602e-25 4.817431e-24 7.261810e-23 2.539887e-24 1.000000e+00
#> gene 33 8.126240e-53 1.574250e-52 3.167398e-52 1.025199e-51 1.663992e-11
#> gene 34 1.595057e-25 7.199230e-24 1.048880e-22 3.874618e-24 1.000000e+00
#> gene 36 1.951038e-01 3.562367e-01 5.718416e-01 1.319965e-01 1.000000e+00
#> gene 40 9.083082e-01 9.652457e-01 9.922022e-01 8.196405e-01 1.000000e+00
#> gene 44 8.672738e-01 9.406292e-01 9.837951e-01 7.642969e-01 1.000000e+00
#> gene 47 5.379924e-01 7.317696e-01 8.939573e-01 3.743749e-01 1.000000e+00
#> gene 49 8.813001e-01 9.535461e-01 9.890048e-01 7.748872e-01 1.000000e+00
#> gene 50 3.174865e-01 5.145136e-01 7.242182e-01 2.228543e-01 1.000000e+00
#> gene 51 1.000000e+00 7.069561e-01 8.729173e-01 3.628007e-01 1.000000e+00
#> gene 52 2.934635e-01 1.000000e+00 7.143980e-01 2.063617e-01 1.000000e+00
#> gene 53 1.273372e-01 2.860155e-01 1.000000e+00 8.201938e-02 1.000000e+00
#> gene 54 6.376563e-01 7.939845e-01 9.181644e-01 1.000000e+00 1.000000e+00
#> gene 55 2.928759e-45 1.450209e-44 7.671125e-44 1.599977e-43 1.000000e+00
#> gene 56 2.391171e-12 5.531515e-11 6.047829e-10 6.903869e-12 1.000000e+00
#> gene 66 8.078831e-01 9.129183e-01 9.744163e-01 6.818311e-01 1.000000e+00
#> gene 69 7.769980e-01 8.953302e-01 9.656875e-01 6.580630e-01 1.000000e+00
#> gene 77 5.924895e-12 1.791474e-10 2.121713e-09 1.367533e-11 1.000000e+00
#> gene 88 1.083763e-49 2.840822e-49 1.005260e-48 3.058781e-48 5.771054e-04
#> gene 89 8.516760e-01 9.368002e-01 9.836354e-01 7.347714e-01 1.000000e+00
#> gene 91 3.268978e-42 4.019945e-41 2.577904e-40 4.730861e-40 9.535215e-01
#> gene 111 1.201388e-31 3.564199e-30 3.490003e-29 1.059821e-29 1.000000e+00
#> XOR_EZH2 3.987969e-56 4.161263e-56 4.919078e-56 8.725395e-56 1.255183e-32
#> OR_CSF3R 9.498741e-53 1.490719e-52 2.977122e-52 4.358181e-52 1.000000e+00
#> gene 56 gene 66 gene 69 gene 77 gene 88
#> gene 4 1.421229e-06 1.520465e-27 3.262925e-27 1.878551e-07 1.000000e+00
#> gene 5 1.000000e+00 3.618500e-01 3.889576e-01 1.000000e+00 1.000000e+00
#> gene 7 1.406181e-48 3.871476e-55 3.814918e-55 1.020476e-48 1.118920e-12
#> gene 29 2.661362e-56 9.537272e-57 9.933801e-57 2.142799e-56 5.185189e-55
#> gene 30 4.503478e-10 2.860128e-32 4.642122e-32 4.326071e-11 1.000000e+00
#> gene 31 1.000000e+00 3.155851e-01 3.458599e-01 1.000000e+00 1.000000e+00
#> gene 32 3.446275e-06 1.806902e-26 3.892678e-26 5.985653e-07 1.000000e+00
#> gene 33 5.489839e-41 1.305529e-52 1.366813e-52 1.519336e-41 8.200761e-05
#> gene 34 2.201635e-05 1.703306e-26 4.385265e-26 3.348595e-06 1.000000e+00
#> gene 36 1.000000e+00 5.165404e-02 6.041283e-02 1.000000e+00 1.000000e+00
#> gene 40 1.000000e+00 6.703902e-01 6.931495e-01 1.000000e+00 1.000000e+00
#> gene 44 1.000000e+00 6.063972e-01 6.250446e-01 1.000000e+00 1.000000e+00
#> gene 47 1.000000e+00 2.088079e-01 2.411136e-01 1.000000e+00 1.000000e+00
#> gene 49 1.000000e+00 6.103907e-01 6.401707e-01 1.000000e+00 1.000000e+00
#> gene 50 1.000000e+00 1.009720e-01 1.174950e-01 1.000000e+00 1.000000e+00
#> gene 51 1.000000e+00 1.924512e-01 2.233663e-01 1.000000e+00 1.000000e+00
#> gene 52 1.000000e+00 8.727485e-02 1.048907e-01 1.000000e+00 1.000000e+00
#> gene 53 1.000000e+00 2.565635e-02 3.440507e-02 1.000000e+00 1.000000e+00
#> gene 54 1.000000e+00 3.186043e-01 3.423848e-01 1.000000e+00 1.000000e+00
#> gene 55 1.845435e-25 3.309532e-45 4.172481e-45 1.860213e-26 9.994253e-01
#> gene 56 1.000000e+00 1.188597e-13 2.540051e-13 3.500525e-01 1.000000e+00
#> gene 66 1.000000e+00 1.000000e+00 5.302130e-01 1.000000e+00 1.000000e+00
#> gene 69 1.000000e+00 4.702734e-01 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 77 6.503864e-01 2.157029e-13 5.717675e-13 1.000000e+00 1.000000e+00
#> gene 88 1.322705e-33 1.620871e-49 1.768708e-49 2.165329e-34 1.000000e+00
#> gene 89 1.000000e+00 5.618497e-01 5.890778e-01 1.000000e+00 1.000000e+00
#> gene 91 8.235703e-20 3.106532e-42 4.495357e-42 3.737460e-21 9.999972e-01
#> gene 111 1.849720e-09 3.686504e-32 6.118775e-32 1.343979e-10 1.000000e+00
#> XOR_EZH2 4.242942e-52 5.212484e-56 5.071474e-56 3.988096e-52 3.801521e-23
#> OR_CSF3R 1.301805e-43 1.058573e-52 1.118007e-52 7.398044e-44 2.625743e-07
#> gene 89 gene 91 gene 111 XOR_EZH2 OR_CSF3R
#> gene 4 2.414639e-28 9.999992e-01 8.749333e-01 1.000000e+00 1.000000e+00
#> gene 5 3.036297e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 7 1.762009e-55 3.211585e-24 1.024328e-36 9.999623e-01 1.586896e-02
#> gene 29 8.806722e-57 1.426321e-55 3.972375e-56 1.924352e-44 5.477097e-53
#> gene 30 3.880165e-33 9.997861e-01 3.576821e-01 1.000000e+00 1.000000e+00
#> gene 31 2.613784e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 32 2.478433e-27 9.999993e-01 8.858138e-01 1.000000e+00 1.000000e+00
#> gene 33 3.963727e-53 4.546772e-14 7.218800e-26 1.000000e+00 8.605589e-01
#> gene 34 2.181867e-27 1.000000e+00 9.707225e-01 1.000000e+00 1.000000e+00
#> gene 36 3.655774e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 40 6.152250e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 44 5.504679e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 47 1.595828e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 49 5.488945e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 50 7.498308e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 51 1.486077e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 52 6.335123e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 53 1.641445e-02 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 54 2.656291e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 55 4.507238e-46 4.659239e-02 9.416075e-09 1.000000e+00 1.000000e+00
#> gene 56 2.808114e-14 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 66 4.386334e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 69 4.113983e-01 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 77 4.693334e-14 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 88 3.090685e-50 2.860947e-06 1.636512e-16 1.000000e+00 9.999997e-01
#> gene 89 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
#> gene 91 4.120282e-43 1.000000e+00 5.490475e-05 1.000000e+00 1.000000e+00
#> gene 111 5.417013e-33 9.999454e-01 1.000000e+00 1.000000e+00 1.000000e+00
#> XOR_EZH2 1.000000e+00 1.828484e-33 8.074223e-44 1.000000e+00 1.000000e+00
#> OR_CSF3R 3.892881e-53 8.311018e-18 1.000000e+00 1.000000e+00 1.000000e+00
#>