LACE Interface — lace_interface • LACE

This function generates a longitudinal clonal tree and a graphic interface to explore the data using as input the clonal tree formatted in the same way as the one produced by LACE during the imputation steps

lace_interface(
  B_mat,
  clones_prevalence,
  C_mat,
  error_rates,
  width = NULL,
  height = NULL,
  elementId = NULL,
  info = ""
)

Arguments

B_mat: (Required). B is the clonal tree matrix where columns are the clonal mutations and and rows are the clones. The clonal tree matrix should contain a column and a row named "Root" representing the root of the tree and the wild type, respectively. B is a binary matrix where 1 are the mutations associated to the clones. The wild type column has all ones
clones_prevalence: (Required) The clonal prevalence matrix
C_mat: (Required) The corrected clonal attachment
error_rates: (Required) The false positive alpha and false negative beta error rates used to infer the clonal tree
width: (optional) Size of the window interafce
height: (optional) Size of the window interafce
elementId: (optional) Element id
info: (Optional). HTML formatted text with information regarding the experiments

Value

An implementation of the htmlwidgets